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The following is a list of the installed software packages maintained at the UF HPC Center ==Software== {| border="1" ! Software !! Version !! Home Website |- | [[Abaqus]] || 6.6-1 || [http://www.abaqus.com/ www.abaqus.com] |- | [[Adina]] || 8.3 || [http://www.adina.com/ www.adina.com] |- | [[Amber]] || 9 || [http://amber.scripps.edu/ amber.scripps.edu] |- | [[Ansys]] || 10.0 || [http://www.ansys.com/ www.ansys.com] |- | [[AUTO3DEM]] || 3.05 || [http://cryoem.ucsd.edu/programs.shtm cryoem.ucsd.edu] |- | [[Blender]] || 2.45 || [http://www.blender.org www.blender.org] |- | [[ccp4]] || 6.0.2 || [http://www.ccp4.ac.uk/main.html www.ccp4.ac.uk] |- | [[CMSSW]] || 2_0_6 || [https://twiki.cern.ch/twiki/bin/view/CMS CMS Software Twiki] |- | [[cnssolve]] || 1.2 || [http://cns.csb.yale.edu/v1.1/ cns.csb.yale.edu] |- | [[Crystal]] || 1.0.2 ||   |- | [[CPMD]] || 3.11.1 || [http://www.cpmd.org/ www.cpmd.org]; |- | [[dlpoly]] || 3.0.7 || [http://www.cse.clrc.ac.uk/ccg/software/DL_POLY/index.shtml www.cse.clrc.ac.uk] |- | [[dock]] || 6.2 || [http://dock.compbio.ucsf.edu/ dock.compbio.ucsf.edu] |- | [[Eman]] || 1.8 || [http://blake.bcm.tmc.edu/eman/ blake.bcm.tms.edu] |- | [[Ensight]] || 8.2 || [http://www.ensight.com/ www.ensight.com] |- | [[Fragstats]] || 2.0 || [http://www.umass.edu/landeco/research/fragstats/fragstats.html www.umass.edu] |- | [[FSL]] || 3.3.11 || [http://www.fmrib.ox.ac.uk/fsl/ www.fmrib.ox.ac.uk] |- | [[Garli]] || 0.942 || [http://www.bio.utexas.edu/faculty/antisense/garli/Garli.html Garli] |- | [[gaussian]] || 03 || [http://www.gaussian.com/ www.gaussian.com] |- | [[Geant]] || 4.8.2 || [http://geant4.web.cern.ch/geant4/ geant4.web.cern.ch] |- | [[Gromacs]] || 3.3.1 || [http://www.gromacs.org/ www.gromacs.org] |- | [[GULP]] || 3.1 || [https://www.ivec.org/GULP/ www.ivec.org] |- | [[hypre]] || 2.0.0 || [http://www.llnl.gov/casc/hypre/software.html Lawrence Livermore National Labs] |- | [[Matlab]] || 7.6 || [http://www.mathworks.com www.mathworks.com] |- | [[meme]] || 3.0.13 || [http://meme.sdsc.edu/meme/intro.html meme.sdsc.edu] |- | [[metis]] || 4.0 || [http://glaros.dtc.umn.edu/gkhome/views/metis glaros.dtc.umn.edu] |- | [[mpiBlast]] || 1.5.0 || [http://www.ncbi.nlm.nih.gov/ NCBI] |- | [[MrBayes]] || 3.1.2 || [http://mrbayes.scs.fsu.edu/ mrbayes.scs.fsu.edu] |- | [[NAMD]] || 2.6 || [http://www.ks.uiuc.edu/Research/namd/ www.ks.uiuc.edu] |- | [[PWscf]] || 3.0 || [http://www.pwscf.org/download.htm www.pwscf.org] |- | [[Rosetta]] || 2.1.2 || [https://www.rosettacommons.org/ www.rosettacommons.org] |- | [[R]] || 2.5.0 || [http://www.r-project.org www.r-project.org] |- | [[SAS]] || 9.1 || [http://www.sas.com SAS] |- | [[Siesta]] || 2.0 || [http://www.uam.es/departamentos/ciencias/fismateriac/siesta/ www.uam.es] |- | [[Stata]] || 10 || [http://www.stata.com/ Stata] |- | [[VASP]] || 4.6.28 || [http://cms.mpi.univie.ac.at/vasp/ cms.mpi.univie.ac.at] |- | [[VTune]] || 9.1 || [http://www.intel.com/cd/software/products/asmo-na/eng/239144.htm] |- |} ==Libraries== {| Border="1" ! Library !! Version !! Compiler !! Location |- | [[FFTW]] || 2.1.5 || Intel || /opt/intel/fftw/2.1.5/lib |}

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